Variant Detail

RSID rs60200309
HGVS NC_000005.10:g.170092608G>A
Chromosome 5
Start position170092608
Stop position170092608
Associated gene(s)DOCK2
Mutation typeTagged SNP
Reference G
Alternative A
Associated allele A
Associated African Allele Frequency 0.0010
Consequence Intergenic
Other population frequencies linkALFA rs60200309

Variants

NamePaperDescription of ComparisonGeneRSIDAssociationDisease StatusMAFStatistical Odds RatioStatistical P-value
Namkoong_rs60200309 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Young Meta-severity vs Control DOCK2 rs60200309 Positive Severe 0.159 2.0 0.00000002
Namkoong_rs60200309 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Meta Japanese vs pan ancestry DOCK2 rs60200309 unknown Severe None 1.97 0.0000000012
Namkoong_rs60200309 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan COVID-19 vs control DOCK2 rs60200309 Positive Susceptibility 0.119 1.24 0.0011
Namkoong_rs60200309 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Severe vs non-severe COVID-19 DOCK2 rs60200309 Positive Severe 0.08 1.27 0.028
Namkoong_rs60200309 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Severe vs non-severe_young DOCK2 rs60200309 Positive Severe 0.08 1.9 0.000011
Namkoong_rs60200309 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Severe COVID-19 vs control DOCK2 rs60200309 Positive Severe 0.129 1.39 0.00031
Namkoong_rs60200309 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Young COVID-19 vs control DOCK2 rs60200309 Positive Susceptibility 0.123 1.32 0.00051
Namkoong_rs60200309 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Young severe COVID-19 vs cntrl DOCK2 rs60200309 Positive Severe 0.159 2.01 0.000000012

Papers

Paper
Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan