Variant Detail

RSID rs35081325
HGVS NC_000003.12:g.45848429A>G/T
Chromosome 3
Start position45848429
Stop position45848429
Associated gene(s)LZTFL1, SLC6A20, CCR9, FYCO1, CXCR6, XCR1, CCR1, CCR3
Mutation typeTagged SNP
Reference A
Alternative G/T
Associated allele T
Associated African Allele Frequency T=0.0045
Consequence Intronic
Other population frequencies linkALFA rs35081325

Variants

NamePaperDescription of ComparisonGeneRSIDAssociationDisease StatusMAFStatistical Odds RatioStatistical P-value
Namkoong_rs35081325 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Severe COVID-19 vs control LZTFL1, LOC107986083, SLC6A20, SACM1L, CCR9, FYCO1, XCR1, CCR1, CCR3 rs35081325 Positive Severe 0.0032 7.06 0.009
Namkoong_rs35081325 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Young severe COVID-19 vs cntrl LZTFL1, LOC107986083, SLC6A20, SACM1L, CCR9, FYCO1, XCR1, CCR1, CCR3 rs35081325 Positive Severe 0.003 11.8 0.014

Papers

Paper
Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan