Population name | Fadista |
Genome | GRCh38 |
Consortium | Not specified |
Super population | EUR |
Population description | COVID-19 HGI A2 cohort |
Population origin | Not specified |
Case population size | 4336 |
Control population size | 623902 |
Comorbidities | None specified |
Mean / median age | Not specified |
Sex | Not specified |
Severity | Severe |
Sample source | Nasopharyngeal swab / Whole blood |
Method | Mendelian randomization (MR) study for IPF causality in COVID-19. Genetic variants associated with IPF susceptibility from previous GWAS were used as instrumental variables on COVID-19 severity from the GWAS meta-analysis by the COVID-19 HGI |
Bioinformatics | Two-sample MR analysis was performed using the random-effects inverse-variance weighted method implemented in the R (version 3.6.1) package MendelianRandomization
(version 0.5.0). |
Imputation details | An allele frequency of 0.001 and an imputation info score of 0.6 was applied to each study before meta-analysis according to COVID-19 HGI protocol |
Limitations | 1) Variance explained by the use of non-MUC5B IPF genetic instruments, although within the range typical of complex traits
2) Selection bias may play a rold in the protective effect found from rs35705950 as (a) a patient group that is heavily enriched for the rs35705950 T undertaking strict self-isolation and/or (b) due to survival bias of the rs35705950 non-IPF
risk allele carriers.
2) Increased sample sizes, both from the IPF or COVID-19 GWAS could also have narrowed the confidence interval |