Population

Population name Fadista
Genome GRCh38
Consortium Not specified
Super population EUR
Population description COVID-19 HGI A2 cohort
Population origin Not specified
Case population size 4336
Control population size 623902
Comorbidities None specified
Mean / median age Not specified
Sex Not specified
Severity Severe
Sample source Nasopharyngeal swab / Whole blood
Method Mendelian randomization (MR) study for IPF causality in COVID-19. Genetic variants associated with IPF susceptibility from previous GWAS were used as instrumental variables on COVID-19 severity from the GWAS meta-analysis by the COVID-19 HGI
Bioinformatics Two-sample MR analysis was performed using the random-effects inverse-variance weighted method implemented in the R (version 3.6.1) package MendelianRandomization (version 0.5.0).
Imputation details An allele frequency of 0.001 and an imputation info score of 0.6 was applied to each study before meta-analysis according to COVID-19 HGI protocol
Limitations 1) Variance explained by the use of non-MUC5B IPF genetic instruments, although within the range typical of complex traits 2) Selection bias may play a rold in the protective effect found from rs35705950 as (a) a patient group that is heavily enriched for the rs35705950 T undertaking strict self-isolation and/or (b) due to survival bias of the rs35705950 non-IPF risk allele carriers. 2) Increased sample sizes, both from the IPF or COVID-19 GWAS could also have narrowed the confidence interval