Title | Regulatory Noncoding and Predicted Pathogenic Coding Variants of CCR5 Predispose to Severe COVID-19 |
DOI | https://doi.org/10.3390/ijms22105372 |
Method | Genome wide association study and Whole exome sequencing |
Curator 1 | fatima |
Curator 2 | admin |
Population | Cantalupo |
Published | Yes |
| Variant detail | Description of Comparison | Gene | RSID | Association | Disease Status | MAF | Statistical Odds Ratio | Statistical P-value |
Variant | Cantalupo_rs12639314 | Hospitalised cases vs controls | CCR5 | rs12639314 | positive | Severe | None | 1.23 | 7.10e-09 |
Variant | Cantalupo_rs34418657 | Hospitalised cases with heterozygous SNP vs control | CCR5 | rs34418657 | positive | Severe | None | None | 2.70e-02 |
Variant | Cantalupo_rs35951367 | Hospitalised cases vs controls | CCR5 | rs35951367 | positive | Severe | None | 1.32 | 3.20e-19 |
Variant | Cantalupo_rs35951367 | Hospitalised cases vs controls replication study 1 | CCR5 | rs35951367 | positive | Severe | None | 1.41 | 3.79e-06 |
Variant | Cantalupo_rs35951367 | Hospitalised cases vs control replication study 2 | CCR5 | rs35951367 | positive | Severe | None | 1.307 | 4.30e-02 |
Variant | Cantalupo_rs9845542 | Hospitalised cases vs controls | CCR5 | rs9845542 | positive | Severe | None | 1.33 | 4.20e-20 |