Variant Detail

RSID rs1886814
HGVS NC_000006.11:g.41502683A>C NC_000006.12:g.41534945A>C
Chromosome 6
Start position41502683
Stop position41502683
Associated gene(s)FOXP4-AS1
Mutation typeTagged SNP
Reference A
Alternative C
Associated allele C
Associated African Allele Frequency 0.0759
Consequence Intronic
Other population frequencies linkALFA rs1886814

Variants

NamePaperDescription of ComparisonGeneRSIDAssociationDisease StatusMAFStatistical Odds RatioStatistical P-value
Namkoong_rs1886814 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan COVID-19 vs control FOXP4 rs1886814 Positive Susceptibility 0.307 1.14 0.0035
Namkoong_rs1886814 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Severe COVID-19 vs control FOXP4 rs1886814 Positive Severe 0.317 1.29 0.000091
Namkoong_rs1886814 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Young COVID-19 vs control FOXP4 rs1886814 Positive Susceptibility 0.314 1.17 0.0045
Namkoong_rs1886814 Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan Young severe COVID-19 vs cntrl FOXP4 rs1886814 Positive Severe 0.34 1.42 0.00012
COVID-19 HGI_rs1886814 Mapping the human genetic architecture of COVID-19 Hospitalised vs Controls FOXP4 rs1886814 Positive Severe 0.042 1.262 0.00000000111
Horowitz_2_rs1886814 Genome-wide analysis provides genetic evidence that ACE2 influences COVID-19 risk and yields risk scores associated with severe disease COVID-19 severe vs not hospitalised FOXP4 rs1886814 positive Severe None None 0.018

Papers

Paper
Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan
Mapping the human genetic architecture of COVID-19
Genome-wide analysis provides genetic evidence that ACE2 influences COVID-19 risk and yields risk scores associated with severe disease